03C-diagonal_analysis
Competitive hierarchy (unfinished)
The competitive scores for all pairs are converted into a pairwise competitive matrix, with a value of “1” representing a win and a value of “0” representing a loss. Pairings that resulted on a draw were assingned a value of 0.5, representing coexistence.
The competitive intransitivity is determined as follow
\[\frac{\sum I{a_{ij}<a_{ji}}}{n(n-1)/2}\]
Diagonal analysis
For record, it took 1655 seconds ~= 26 minutes to compute the diagonal measures for 13 communities X 10000 randomization, merge them into one single data frame.
data/output/networks_diag
data/output/networks_diag_randomized
For a network matrix \(m_{ij}\), the fraction of coexistence as a fucntion of distance to diagonal is calculated as the
\[\frac{}{\lvert i-j \lvert}\]
networks_diag_randomized has four columns
Randomization: the number of randomization
Plot the diagonal analysis
Summary
isolates: 68 isolates
pairs: 186 pairs
communities: metadata of 13 communities
network_community.Rdata saves one R lists. net_list has 13 tbl_graph objects. that describes the competitive networks of my communities, where p_net_list has 13 pictures.
isolates <- read_csv(here::here("data/output/isolates.csv"))
Rows: 100 Columns: 62
── Column specification ────────────────────────────────────────────────────────────────────
Delimiter: ","
chr (8): Assembly, ExpID, Community, Family, Genus, Sequence, PreferredCS, SecretedCS
dbl (52): ID, Isolate, GenusScore, ColonyCount, DilutionFactor, Epsilon, Win, Lose, Draw...
lgl (2): Fermenter, GramPositive
ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
pairs <- read_csv(here::here("data/output/pairs.csv"))
Rows: 248 Columns: 29
── Column specification ────────────────────────────────────────────────────────────────────
Delimiter: ","
chr (14): Assembly, Community, InteractionType, InteractionTypeFiner, ExpID1, Family1, G...
dbl (10): Isolate1, Isolate2, From, To, ID1, GenusScore1, ID2, GenusScore2, SeqDifferenc...
lgl (5): Fermenter1, GramPositive1, Fermenter2, GramPositive2, Isolate1Dominant
ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
communities <- read_csv(here::here("data/output/communities.csv"))
Rows: 17 Columns: 4
── Column specification ────────────────────────────────────────────────────────────────────
Delimiter: ","
chr (1): Community
dbl (3): CommunitySize, CommunityPairSize, CommunitiyMotifSize
ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
load(here::here("data/output/network_community.Rdata"))
Convert the graph file into txt
So that the graph is readable in python
Error: object 'f' not found
Plot network in matrix
Upper half matrices

Plot network in graph
There are some functions to play with

Combine matrix and network plot
$C1R2
[1] NA
$C1R4
[1] NA
$C1R6
[1] NA
$C1R7
[1] NA
$C2R6
[1] NA
$C2R8
[1] NA
$C4R1
[1] NA
$C7R1
[1] NA
$C8R4
[1] NA
$C10R2
[1] NA
$C11R1
[1] NA
$C11R2
[1] NA
$C11R5
[1] NA

---
title: "Analysis on the empirical invasion networks"
author: "Chang-Yu Chang"
date: "`r Sys.Date()`"
output:
  html_notebook:  
    toc: yes
    number_sections: no
---

```{r setup, include = F}
knitr::opts_chunk$set(cache = FALSE, echo = FALSE)

library(tidyverse)
library(data.table)
library(cowplot)
library(igraph)
library(tidygraph)
library(ggraph)
source(here::here("plotting_scripts/network_functions.R"))
run_scripts <- F
communities <- read_csv(here::here("data/output/communities.csv"))
```

# Introduction

- The R scripts (sourced in this Rmd) can be run externally to Rstudio.
- The R scripts are only for saving R functions, processing raw and temporary data.
- All visualization codes are in this Rmd file.

# 03A-make_network

- Make community network from `data/output/pairs.csv`.

- Plot networks and matrices

## Make network

```{r}
if (run_scripts) source("script/03A-make_network-01-make_pairwise_network.R")
```


```{r fig.width=10, fig.height=8}
p_net_list <- lapply(net_list, FUN = plot_competitive_network)
plot_grid(plotlist = p_net_list, ncol = 4)
```



## Pairwise matrice

```{r}
if (run_scripts) source("script/03A-make_network-02-pairwise_matrix.R")
```


Plot the communities' pairwise matrix, whose axis are ordered by competitive ranks

```{r fig.width=10, fig.height=3}
p <- plot_grid(plotlist = p_net_matrix_plot_list, nrow = 2)
p
ggsave("figure/03A-adjacent_matrix.png", plot = p, width = 10, height = 3)
```


## Randomize networks

```{r}
if (run_scripts) source("script/03A-make_network-03-randomize_network.R")
```

For record, it took 2603 seconds ~= 40 mins to generate 10000 randomized networks for all 13 communities. 

It took ~50 seconds to randomize 1000 times for each of the communities. So total of 641 seconds needed.

The randomized networks are saved in `data/output/network_randomized.Rdata` which contains a two-layer R list `net_randomized_list` in which the first layer has the 13 communities and the second layer has 1000 randomized networks.

Example of randomized network matrix
```{r fig.width = 3, fig.height = 3}
load(here::here("data/output/network_randomized.Rdata"))
net_randomized_list$C11R2[[1]] %>% plot_adjacent_matrix()
```


# 03B-network_motifs

```{r}
# Data
isolates <- read_csv(here::here("data/output/isolates.csv"))
pairs <- read_csv(here::here("data/output/pairs.csv"))
communities <- read_csv(here::here("data/output/communities.csv"))
communities_name <- communities$Community
communities_size <- communities$CommunitySize
communities_name_pool <- c(paste0("C", 1:12, "Rpool"), paste0("C", rep(1:12, each = 8), "R", rep(1:8, 12)))
families_name <- c("Aeromonadaceae", "Alcaligenaceae", "Bradyrhizobiaceae", "Brucellaceae", "Burkholderiaceae", "Caulobacteraceae", "Cellulomonadaceae", "Chitinophagaceae", "Chthoniobacteraceae", "Comamonadaceae", "Cryomorphaceae", "Enterobacteriaceae", "Enterococcaceae", "Flavobacteriaceae", "Hyphomicrobiaceae", "Listeriaceae", "Microbacteriaceae", "Moraxellaceae", "Nocardiaceae", "Obscuribacterales.17", "Oxalobacteraceae", "Paenibacillaceae", "Phyllobacteriaceae", "Porphyromonadaceae", "Pseudomonadaceae", "Rhizobiaceae", "Sanguibacteraceae", "Sphingobacteriaceae", "Sphingomonadaceae", "Xanthomonadaceae")

```


## Detect motifs in networks


```{r eval = F}
# This may take ~5 minutes for 10000 bootstrapping
if (run_scripts) source("script/03B-invasion_network-01-detect_motif.R")
```

- `networks_motif`: data.frame
- `networks_motif_randomized`: data.frame for all randomized networks motif counts

Empirical network motifs. 13 communities x 7 motifs = 91 rows

```{r}
networks_motif <- read_csv(here::here("data/output/networks_motif.csv"))
networks_motif
```

Shuffled network motifs. 13 communities x 7 motifs x 1000 bootstraps = 91000 rows

```{r}
networks_motif_randomized <- read_csv(here::here("data/output/networks_motif_randomized.csv"))
networks_motif_randomized
```



## Motif distributions

```{r}
if (run_scripts) source("script/03B-invasion_network-02-plot_motif.R")
```


```{r fig.width = 8, fig.height = 1.5}
load(here::here("data/output/motif_list.Rdata"))
p_motif_example <- plot_grid(plotlist = lapply(motif_list, function(x) plot_competitive_network(x, node_size=3)), nrow = 1)
p_motif_example
ggsave("figure/03B-example_motifs.png", p_motif_example, width = 10, height = 1.5)
```


Detect motifs in randomized networks

```{r fig.width=5, fig.height=5}
# Plot observations and 5% and 95% percentiles ----
p_motif_randomized <-
  ggplot() +
  # 5% and 95% percentiles in randomized networks
  geom_point(data = networks_motif_randomized_percentile, aes(x = Motif, y = CountMotif, group = Motif), col = "black") +
  geom_segment(data = spread(networks_motif_randomized_percentile, Percentile, CountMotif),
               aes(x = Motif, xend = Motif, y = p5, yend = p95), col = "black") +
  # Observations
  geom_point(data = networks_motif, aes(x = Motif, y = CountMotif), col = "red") +
  #  scale_colour_manual(name="Error Bars",values=c("black", "red")) +
  facet_wrap(Community ~., scale = "free_y") +
  theme_bw() +
  ggtitle("Motif counts in the invasion networks") +
  labs(x = "motif", y = "Count")

p_motif_randomized
ggsave("figure/03B-motif_randomized.png", p_motif_randomized, width = 10, height = 10)
```

Plot the histogram of randomized network motifs 

```{r fig.width = 10, fig.height = 15}
# Plot histogram in motif count distribution ----
p_motif_randomized_histo <-
  networks_motif_randomized %>%
#  filter(Community == "C11R1") %>%
  ggplot() +
  geom_histogram(aes(CountMotif), fill = NA, col = 1) +
  geom_vline(data = networks_motif, aes(xintercept = CountMotif), col = "red") +
  facet_grid(Community ~ Motif, scale = "free") +
  coord_flip() +
  theme_bw() +
  theme(strip.text.x = element_blank(),
        panel.grid.minor = element_blank(),
        axis.text.x = element_text(angle = 90)) +
  labs(x = "motif counts", y = "counts in randomization")
p_motif_randomized_histo
ggsave("figure/03B-motif_histogram.png", p_motif_randomized_histo, width = 20, height = 30); 
```




# 03C-diagonal_analysis

## Competitive hierarchy (unfinished)

```{r}
if (run_scripts) source("script/03C-diagnonal_analysis-01-competitive_hierarchy.R")
```

The competitive scores for all pairs are converted into a pairwise competitive matrix, with a value of "1" representing a win and a value of "0" representing a loss. Pairings that resulted on a draw were assingned a value of 0.5, representing coexistence.

The competitive intransitivity is determined as follow

$$\frac{\sum I{a_{ij}<a_{ji}}}{n(n-1)/2}$$

## Diagonal analysis

```{r}
# It takes 26 minutes to run this script for 10000 bootstraps
if (run_scripts) source("script/03C-diagnonal_analysis-02-distance_to_diagonal.R")
```

For record, it took 1655 seconds ~= 26 minutes to compute the diagonal measures for 13 communities X 10000 randomization, merge them into one single data frame.

`data/output/networks_diag`

`data/output/networks_diag_randomized`

For a network matrix $m_{ij}$, the fraction of coexistence as a fucntion of distance to diagonal is calculated as the

$$\frac{}{\lvert i-j \lvert}$$
 
`networks_diag_randomized` has four columns

`Randomization`: the number of randomization 

```{r}
networks_diag <- read_csv(here::here("data/output/networks_diag.csv"))
networks_diag_randomized
```

```{r}
networks_diag_randomized <- read_csv(here::here("data/output/networks_diag_randomized.csv"))
networks_diag_randomized
```



## Plot the diagonal analysis

```{r}
if (run_scripts) source("script/03C-diagnonal_analysis-03-plot_diagonal_analysis.R")
```


```{r fig.width = 5, fig.height = 5}
# R function for plotting boxplot
plot_boxplot <- function(networks_diag, networks_diag_randomized, facet_by_community = TRUE) {
  ggplot() +
    # Random networks
    geom_boxplot(data = networks_diag_randomized, aes(x = DistanceToDiagonal, y = CountCoexistence, group = DistanceToDiagonal)) +
    # Observed networks
    geom_point(data = networks_diag, aes(x = DistanceToDiagonal, y = CountCoexistence, group = DistanceToDiagonal), col = "red", size = 2) +
    geom_line(data = networks_diag, aes(x = DistanceToDiagonal, y = CountCoexistence), col = "red") +
    {if (facet_by_community) facet_wrap(Community~., scale = "free") } +
    # Asethetic setup
    theme_bw() +
    theme(panel.grid.minor = element_blank()) +
    labs(x = "distance to diagional (|i-j|)", y = "count of coexistence")
}

networks_diag <- read_csv(here::here("data/output/networks_diag.csv")) %>% mutate(Community = ordered(Community, communities$Community))
networks_diag_randomized <- read_csv(here::here("data/output/networks_diag_randomized.csv")) %>% mutate(Community = ordered(Community, communities$Community))

# Individual community
p_networks_diag <- plot_boxplot(networks_diag, networks_diag_randomized, facet_by_community = T) +
  ggtitle("13 communities")

# Network pool
## Pool all communities
networks_diag_pool <- networks_diag %>% group_by(DistanceToDiagonal) %>% summarize(CountCoexistence = sum(CountCoexistence))
networks_diag_randomized_pool <- networks_diag_randomized %>% group_by(Randomization, DistanceToDiagonal) %>% summarize(CountCoexistence = sum(CountCoexistence))
p_networks_diag_pool1 <- plot_boxplot(networks_diag_pool, networks_diag_randomized_pool, facet_by_community = F) +
  ggtitle("13 communities pooled together")

## Pool small communities
networks_diag_pool <- networks_diag %>% filter(!Community %in% c("C11R1", "C11R2")) %>% group_by(DistanceToDiagonal) %>% summarize(CountCoexistence = sum(CountCoexistence))
networks_diag_randomized_pool <- networks_diag_randomized %>% filter(!Community %in% c("C11R1", "C11R2")) %>% group_by(Randomization, DistanceToDiagonal) %>% summarize(CountCoexistence = sum(CountCoexistence))
p_networks_diag_pool2 <- plot_boxplot(networks_diag_pool, networks_diag_randomized_pool, facet_by_community = F) +
  ggtitle("11 small communities pooled together")

## Pool small communities
networks_diag_pool <- networks_diag %>% filter(!Community %in% c("C1R7", "C11R1", "C11R2")) %>% group_by(DistanceToDiagonal) %>% summarize(CountCoexistence = sum(CountCoexistence))
networks_diag_randomized_pool <- networks_diag_randomized %>% filter(!Community %in% c("C1R7", "C11R1", "C11R2")) %>% group_by(Randomization, DistanceToDiagonal) %>% summarize(CountCoexistence = sum(CountCoexistence))
p_networks_diag_pool3 <- plot_boxplot(networks_diag_pool, networks_diag_randomized_pool, facet_by_community = F) +
  ggtitle("10 small communities pooled together")


```


```{r fig.width = 5, fig.height = 5}
p_networks_diag
ggsave("figure/03C-networks_diagonal.png", p_networks_diag, width = 10, height = 10)
```



```{r fig.width = 9, fig.height = 3}
p_networks_diag_pool <- plot_grid(p_networks_diag_pool1, p_networks_diag_pool2, p_networks_diag_pool3, ncol = 3, align = "h")
p_networks_diag_pool
ggsave("figure/03C-networks_diagonal_pool.png", p_networks_diag_pool, width = 10, height = 3)

```




# Summary


- `isolates`: 68 isolates
- `pairs`: 186 pairs
- `communities`: metadata of 13 communities
- `network_community.Rdata` saves one R lists. `net_list`  has 13 `tbl_graph` objects. that describes the competitive networks of my communities, where `p_net_list` has 13 pictures.

```{r echo = T}
isolates <- read_csv(here::here("data/output/isolates.csv"))
pairs <- read_csv(here::here("data/output/pairs.csv"))
communities <- read_csv(here::here("data/output/communities.csv"))
load(here::here("data/output/network_community.Rdata"))
```


## Convert the graph file into txt 

So that the graph is readable in python

```{r}
load(here::here("data/output/network_community.Rdata"))
load(here::here("data/output/motif_list.Rdata"))

# Only use those that are 
library(igraph)
for (i in 1:length(net_list)) {
    write_graph(net_list[[i]], here::here(paste0("data/temp/networks/", names(net_list)[i], ".txt")))
}
for (i in 1:length(motif_list)) {
    write_graph(motif_list[[i]], here::here(paste0("data/temp/networks/motif", i, ".txt")))
}


write_graph(net_list[[i]], here::here(paste0("data/temp/networks/", names(net_list)[i], ".txt")))
write_graph(motif_list[[i]], here::here(paste0("data/temp/networks/", names(net_list)[i], ".txt")))

```



## Plot network in matrix

Upper half matrices

```{r fig.width=5, fig.height=8}
p_net_matrix_list <- lapply(net_list, function(x) plot_adjacent_matrix(x)) %>% setNames(communities$Community)
p_net_matrix_list <- p_net_matrix_list[order(communities$CommunitySize, decreasing = T)]
plot_grid(plotlist = p_net_matrix_list, labels = LETTERS[2:14], ncol = 3, hjust = 1)
```

## Plot network in graph

There are some functions to play with 
```{r, fig.width=5, fig.height=8}
p_net_list <- p_net_list[order(communities$CommunitySize,decreasing = T)]
plot_grid(plotlist = p_net_list, labels = LETTERS[2:14], ncol = 3, hjust = -1)
```

## Combine matrix and network plot

```{r}
p_list <- rep(list(NA), length(net_list))
names(p_list) <- communities$Community

for (i in 1:length(net_list)) {
  p_list[[i]] <- ggdraw(p_net_matrix_list[[i]]) +
    draw_plot(plot = p_net_list[[i]], x = 0, y = 0, width = 0.45, height = 0.5)
}
```


```{r, fig.width=10, fig.height=16}
p <- plot_grid(plotlist = p_list, ncol = 3, hjust = -1, vjust = 1)
ggsave("figure/03-networks.png", width = 20, height = 32)
p
```



